STRINGSTRING
Phatr38848 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr38848" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr38848Predicted protein (552 aa)    
Predicted Functional Partners:
PCNA
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (260 aa)
     
  0.915
Phatr19604
Predicted protein (363 aa)
   
  0.852
Phatr54612
Ercc4-like protein (736 aa)
     
  0.852
Phatr20574
Predicted protein (720 aa)
   
  0.850
MRE11
Predicted protein (550 aa)
   
  0.801
Phatr9529
Predicted protein (348 aa)
   
  0.793
Phatr47369
Predicted protein (1496 aa)
   
  0.793
PHATR_2089
Predicted protein (449 aa)
   
  0.793
Phatr18280
Predicted protein (504 aa)
   
  0.793
Phatr14845
Predicted protein (440 aa)
   
  0.793
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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