STRINGSTRING
Phatr38891 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr38891" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr38891Predicted protein (373 aa)    
Predicted Functional Partners:
Phatr9654
Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine (347 aa)
  0.996
PHATR_3140
Predicted protein (196 aa)
 
   
  0.994
Phatr12888
Predicted protein (202 aa)
 
  0.992
Phatr19324
Predicted protein (554 aa)
 
  0.991
Phatr12810
Predicted protein (202 aa)
 
  0.925
Phatr13175
Predicted protein (391 aa)
         
  0.900
TYR1
Tyrosinase (546 aa)
         
    0.900
Phatrdraft870
Predicted protein (457 aa)
       
  0.857
Phatr51609
Predicted protein (529 aa)
       
  0.857
Phatr10025
Predicted protein (295 aa)
 
   
  0.842
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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