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STRINGSTRING
Phatr3924 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr3924" - Ubiquitin carboxyl-terminal hydrolase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr3924Ubiquitin carboxyl-terminal hydrolase (325 aa)    
Predicted Functional Partners:
Phatr49969
Predicted protein (384 aa)
     
 
  0.964
RPN11
Regulatory proteasome non-atpase subunit 11 (311 aa)
     
 
  0.927
Phatr41928
Ubiquitin carboxyl-terminal hydrolase (232 aa)
     
   
  0.917
Phatr29340
Predicted protein; Ubiquitin carboxyl-terminal hydrolase; Belongs to the peptidase C19 family (499 aa)
     
 
  0.916
RPN10
Regulatory proteasome non-atpase subunit 10 (231 aa)
     
 
  0.912
RPN1
Regulatory proteasome non-atpase subunit 1 (916 aa)
     
 
  0.895
Phatr31584
Predicted protein; Belongs to the peptidase C19 family (618 aa)
     
 
  0.887
RPN6
Regulatory proteasome non-atpase subunit 6 (405 aa)
     
 
  0.877
RPN12
Regulatory proteasome non-atpase subunit 12 (248 aa)
     
 
  0.873
Phatr18008
Ubiquitinyl hydrolase 1; Ubiquitin carboxyl-terminal hydrolase (844 aa)
     
   
  0.866
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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