STRINGSTRING
Phatr39247 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr39247" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr39247Predicted protein (430 aa)    
Predicted Functional Partners:
Phatr49253
Predicted protein (566 aa)
     
 
  0.755
GDCP
Glycine decarboxylase p-protein (1005 aa)
         
  0.719
Phatr47293
Predicted protein (580 aa)
         
  0.716
Phatr47025
Alanine racemase (710 aa)
   
 
  0.642
Phatr31367
Predicted protein (819 aa)
     
 
  0.623
Phatr3262
Predicted protein (220 aa)
   
          0.507
NTT1
Nucleotide transporter 1 (610 aa)
   
          0.498
NTT2
Nucleotide transporter 2 (479 aa)
   
          0.498
Phatr49591
Predicted protein (202 aa)
     
 
  0.485
Phatr12459
Predicted protein (179 aa)
   
     
  0.483
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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