STRINGSTRING
Phatr39421 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr39421" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr39421Predicted protein (649 aa)    
Predicted Functional Partners:
Phatr17772
Predicted protein (1313 aa)
         
  0.496
Phatr52174
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1143 aa)
         
  0.442
Phatr13581
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1165 aa)
         
  0.442
Phatr52412
Channel voltage activated chloride channel (693 aa)
           
  0.429
Phatr46097
Predicted protein (980 aa)
           
  0.429
Phatr28245
Voltage activated chloride channel CLC7 type (768 aa)
           
  0.429
Phatrdraft391
Predicted protein (749 aa)
     
 
  0.414
Phatrdraft387
Predicted protein (749 aa)
     
 
  0.414
Phatr676
P1B, P type ATPase (710 aa)
     
 
  0.414
ATPase2-1B
P1B, P type ATPase (827 aa)
     
 
  0.414
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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