STRINGSTRING
Phatr39687 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr39687" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr39687Predicted protein (118 aa)    
Predicted Functional Partners:
Phatr19413
Predicted protein (69 aa)
     
  0.990
Phatr25714
Ribosomal protein L15 (205 aa)
     
  0.989
Phatr31919
Predicted protein (305 aa)
     
  0.989
Phatr30670
40S ribosomal protein S21 (85 aa)
     
  0.989
Phatr11032
Predicted protein (115 aa)
     
  0.988
Phatr9199
Predicted protein (151 aa)
     
  0.985
Phatr8185
Predicted protein (100 aa)
     
 
  0.982
Phatr28147
Predicted protein (62 aa)
     
 
  0.981
rpl2
Predicted protein (257 aa)
     
  0.968
Phatr48411
Predicted protein (264 aa)
     
  0.953
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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