STRINGSTRING
Phatr3969 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr3969" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr3969Predicted protein (256 aa)    
Predicted Functional Partners:
Phatr50577
Acetylornithine aminotransferase (476 aa)
 
  0.968
Phatr30514
Predicted protein (351 aa)
 
 
  0.957
Phatr21116
Argininosuccinate synthase (418 aa)
   
   
  0.920
Phatr34526
Predicted protein (440 aa)
   
 
  0.907
Phatr19762
Predicted protein (807 aa)
   
 
  0.898
CPS-II
Predicted protein (1542 aa)
   
   
  0.894
Phatr24195
CPS III, carbamoyl-phosphate synthase mitochindrial (1463 aa)
   
   
  0.894
Phatr36913
Predicted protein (357 aa)
 
 
  0.890
Phatr12762
Predicted protein (282 aa)
 
  0.883
OAT
Ornithine aminotransferase (448 aa)
 
 
  0.852
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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