STRINGSTRING
Phatr39868 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr39868" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr39868Predicted protein (248 aa)    
Predicted Functional Partners:
PDS-like1
PDS-like 1, phytoene desaturase-like protein, phytoene dehydrogenase-like protein (545 aa)
   
          0.523
Phatr35592
Predicted protein (195 aa)
   
          0.490
Phatr5617
Predicted protein (239 aa)
   
          0.486
Phatr26293
Photosystem II 12 kDa extrinsic protein, chloroplastic (148 aa)
   
          0.476
Phatr14307
Predicted protein (90 aa)
   
          0.435
Phatr43187
Predicted protein (557 aa)
   
          0.434
Phatr54051
Pds-like2, phytoene desaturase-like protein (605 aa)
   
          0.424
Phatr11048
Predicted protein (136 aa)
   
          0.423
Phatr37532
Predicted protein (322 aa)
   
          0.403
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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