STRINGSTRING
Phatr4003 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr4003" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr4003Predicted protein (255 aa)    
Predicted Functional Partners:
CBP
Calcium binding protein (132 aa)
       
  0.797
CaM2
Calmodulin (154 aa)
       
  0.797
CaM1
Calmoduline (149 aa)
 
   
  0.797
Phatr21744
Predicted protein (149 aa)
       
  0.797
hCDK7
Predicted protein (358 aa)
 
 
0.689
hCDK1
Predicted protein (380 aa)
 
 
0.673
CATR1
Caltractin (151 aa)
       
  0.654
CATR2
Caltractin (192 aa)
       
  0.654
Phatr47992
Predicted protein (432 aa)
       
  0.569
Phatr48783
Predicted protein (402 aa)
       
  0.522
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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