STRINGSTRING
Phatr40052 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr40052" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr40052Predicted protein (377 aa)    
Predicted Functional Partners:
Phatr49522
5-hydroxyisourate hydrolase (299 aa)
   
  0.926
Phatrdraft1777
Predicted protein (635 aa)
   
   
  0.766
Phatr44759
Transmembrane chitin synthase, glycosaminyl transferas (904 aa)
   
   
  0.766
Phatr37908
Transmembrane chitin synthase (933 aa)
   
   
  0.766
Phatr15968
Predicted protein (1387 aa)
 
          0.646
Phatr3787
Predicted protein (333 aa)
 
        0.518
Phatr47245
Predicted protein (480 aa)
   
 
  0.449
Phatr45980
Predicted protein (348 aa)
   
 
  0.449
Phatr45712
Predicted protein (480 aa)
   
 
  0.449
Phatr34317
Dolichol phosphate glucosyltransferase (320 aa)
   
 
  0.449
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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