STRINGSTRING
Phatr40135 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr40135" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr40135Predicted protein (461 aa)    
Predicted Functional Partners:
ODC3
Ornithine decarboxylase (564 aa)
       
  0.580
Phatr2834
Predicted protein (392 aa)
       
  0.580
Phatr21592
Diaminopimelate decarboxylase (481 aa)
       
  0.580
ODC2
Ornithine decarboxylase (390 aa)
       
  0.580
Phatr41409
Predicted protein (1506 aa)
         
  0.578
Phatr32292
Predicted protein (502 aa)
         
  0.578
NRPS
Non ribosomal peptide synthase (1367 aa)
   
   
  0.552
Phatr16471
Predicted protein (207 aa)
   
        0.541
Phatr46071
Predicted protein (180 aa)
   
        0.502
Phatr33845
Predicted protein (315 aa)
   
        0.494
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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