STRINGSTRING
Phatr40154 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr40154" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr40154Predicted protein (319 aa)    
Predicted Functional Partners:
Phatr27735
Predicted protein (538 aa)
     
 
  0.952
Phatr17772
Predicted protein (1313 aa)
       
      0.869
sUbi
Ubiquitin-like protein (268 aa)
     
  0.624
hUbi
Predicted proteinUbiquitin extension protein 4 (381 aa)
     
  0.624
Phatr49037
Predicted protein (205 aa)
     
  0.624
UBI3
Ubiquitin extension protein 3 (155 aa)
     
  0.624
Phatrdraft748
Predicted protein (723 aa)
       
      0.623
Phatr8741
Predicted protein (92 aa)
       
 
  0.583
PAS2
Ubiquitin carrier protein (168 aa)
       
  0.557
Phatr36198
Ubiquitin carrier protein (163 aa)
       
  0.557
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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