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STRINGSTRING
Phatr40171 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr40171" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr40171Predicted protein (364 aa)    
Predicted Functional Partners:
Phatr43038
Predicted protein (1112 aa)
     
 
  0.886
Phatr47275
Predicted protein (1055 aa)
       
 
  0.884
Phatr44037
Predicted protein (1291 aa)
       
 
  0.884
Phatr45316
Predicted protein (1451 aa)
     
 
  0.883
RabGDI
Rab GDP dissociation inhibitor; Belongs to the Rab GDI family (446 aa)
     
 
  0.873
Phatr46588
Predicted protein (1225 aa)
       
 
  0.849
Phatr42975
Predicted protein; Belongs to the STXBP/unc-18/SEC1 family (689 aa)
     
 
  0.846
Phatr12113
Predicted protein (284 aa)
     
 
  0.832
Phatr43830
Vacuolar protein sorting-associated protein 35 (1712 aa)
     
 
  0.826
Rab2
Predicted protein (210 aa)
     
 
  0.806
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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