STRINGSTRING
Phatr40171 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr40171" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr40171Predicted protein (364 aa)    
Predicted Functional Partners:
RabGDI
Predicted protein (446 aa)
     
 
  0.792
Phatr6635
Predicted protein (159 aa)
     
 
  0.730
Rab5c
Hypothetical protein (181 aa)
     
 
  0.730
Rab5a
Predicted protein (201 aa)
     
 
  0.730
SybD
Predicted protein (274 aa)
     
  0.701
SybA
Predicted protein (226 aa)
     
  0.701
Rab6
Predicted protein (236 aa)
     
 
  0.694
SNAP
Predicted protein (313 aa)
     
  0.687
Rab2
Predicted protein (210 aa)
     
  0.687
Phatr43871
Predicted protein (673 aa)
     
 
  0.684
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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