STRINGSTRING
Phatr40200 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr40200" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr40200Predicted protein (710 aa)    
Predicted Functional Partners:
Phatr14145
Predicted protein (516 aa)
     
 
  0.936
Phatr43105
Predicted protein (455 aa)
     
 
  0.917
Phatr30365
Predicted protein; Involved in the biogenesis of the 60S ribosomal subunit (677 aa)
     
 
  0.917
Phatr45356
Predicted protein (479 aa)
     
      0.910
Phatr47058
Predicted protein (606 aa)
     
      0.887
Phatr43447
Predicted protein (671 aa)
     
 
  0.881
Phatr8777
Predicted protein (110 aa)
     
 
  0.866
Phatr45828
Predicted protein (805 aa)
     
      0.862
helicase_6
Predicted protein (476 aa)
     
      0.843
Phatr16814
Predicted protein (662 aa)
     
 
  0.819
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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