STRINGSTRING
Phatr40271 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr40271" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr40271Predicted protein (446 aa)    
Predicted Functional Partners:
Phatr49253
Predicted protein (566 aa)
     
 
  0.755
GDCP
Glycine decarboxylase p-protein (1005 aa)
     
 
  0.725
Phatr47293
Predicted protein (580 aa)
         
  0.716
Phatr47025
Alanine racemase (710 aa)
   
 
  0.642
Phatr31367
Predicted protein (819 aa)
     
 
  0.623
Phatr49591
Predicted protein (202 aa)
     
 
  0.485
GDCT
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine (421 aa)
     
 
  0.475
TPI/GapC3
Triosephosphate isomerase/glyceraldehyde-3-phosphate dehydrogenase (614 aa)
         
  0.430
P5CS
Delta l-pyrroline-5-carboxylate synthetase (747 aa)
   
   
  0.426
Phatr18027
Predicted protein (706 aa)
   
   
  0.426
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
Server load: low (7%) [HD]