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Phatr4048 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr4048" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr4048Predicted protein (229 aa)    
Predicted Functional Partners:
Phatr27735
Predicted protein (538 aa)
   
   
  0.538
Phatr12107
Predicted protein (460 aa)
         
  0.536
ACC2
Biotin carboxylase (2282 aa)
   
        0.520
Phatr47067
Predicted protein (1237 aa)
   
        0.518
Phatrdraft1682
Anthranilate synthase (927 aa)
         
  0.507
Phatr17238
Anthranilate synthase (958 aa)
         
  0.507
GltX
Ferredoxin-dependent glutamate synthase, fusion of large and small subunits (1591 aa)
              0.491
Phatr24739
Predicted protein (1594 aa)
              0.491
Phatr21682
Predicted protein (416 aa)
   
   
  0.484
Phatr52174
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1143 aa)
         
  0.460
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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