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Phatr40606 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr40606" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr40606Predicted protein (3084 aa)    
Predicted Functional Partners:
Phatr24978
Predicted protein (506 aa)
       
 
  0.875
Phatr10862
Annotation not available (309 aa)
       
 
  0.760
Phatr27923
Predicted protein (623 aa)
     
 
  0.745
Skp1_3
S-phase kinase-associated protein (158 aa)
       
 
  0.656
Skp1;2
Predicted protein (175 aa)
       
 
  0.656
Skp1_1
Predicted protein (169 aa)
       
 
  0.656
Phatr29711
Predicted protein (221 aa)
       
 
  0.648
Phatr44050
Predicted protein (125 aa)
       
 
  0.524
Phatr28794
Predicted protein; Essential component of the vacuolar proton pump (V- ATPase), a multimeric enzyme that catalyzes the translocation of protons across the membranes. Required for assembly and activity of the V-ATPase (818 aa)
     
 
  0.402
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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