STRINGSTRING
Phatr40679 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr40679" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr40679Predicted protein (376 aa)    
Predicted Functional Partners:
Phatr50303
Predicted protein (124 aa)
       
 
  0.699
Phatr13399
Predicted protein (252 aa)
 
 
   
  0.491
Phatr9886
Predicted protein (231 aa)
 
 
   
  0.486
Phatrdraft453
Predicted protein (292 aa)
       
      0.475
Phatr45964
Predicted protein (438 aa)
       
      0.475
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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