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Phatr40880 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr40880" - Agmatinase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr40880Agmatinase (416 aa)    
Predicted Functional Partners:
OAT
Ornithine aminotransferase (448 aa)
   
  0.803
Phatr50577
Acetylornithine aminotransferase (476 aa)
   
  0.801
Phatr19762
Predicted protein (807 aa)
   
  0.714
ODC3
Ornithine decarboxylase (564 aa)
       
  0.703
Phatr2834
Predicted protein (392 aa)
       
  0.703
Phatr21592
Diaminopimelate decarboxylase (481 aa)
       
  0.703
ODC2
Ornithine decarboxylase (390 aa)
       
  0.703
Phatr7913
Predicted protein (76 aa)
       
  0.645
Phatr7910
Predicted protein (70 aa)
       
  0.645
Phatr55177
Spermine/spermidine synthase (299 aa)
       
  0.645
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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