• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Phatr40880 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr40880" - Agmatinase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr40880Agmatinase; Belongs to the arginase family (416 aa)    
Predicted Functional Partners:
P5CS
Delta-1-pyrroline-5-carboxylate synthase; Delta l-pyrroline-5-carboxylate synthetase; In the C-terminal section; belongs to the gamma- glutamyl phosphate reductase family (747 aa)
           
  0.883
Phatr18027
Predicted protein (706 aa)
           
  0.883
OAT
Ornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family (448 aa)
   
 
  0.876
Phatr3362
Predicted protein (322 aa)
         
  0.818
Phatr15324
Predicted protein (378 aa)
   
   
  0.814
Phatr21116
Predicted protein; Argininosuccinate synthase (418 aa)
     
   
  0.809
Phatr34526
Predicted protein (440 aa)
   
   
  0.800
Phatr15083
Predicted protein (374 aa)
   
   
  0.789
Phatr44984
Predicted protein (552 aa)
   
 
  0.771
Phatr50034
CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen (547 aa)
   
   
  0.733
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
Server load: low (6%) [HD]