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Phatr40901 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr40901" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr40901Predicted protein (405 aa)    
Predicted Functional Partners:
PheRS
Phenylalanyl-trna synthetase class IIc family protein (405 aa)
   
   
  0.813
Phatr47067
Predicted protein (1237 aa)
   
 
  0.788
Phatr27709
Predicted protein (640 aa)
   
   
  0.765
Phatr17238
Anthranilate synthase (958 aa)
   
   
  0.710
Phatrdraft1682
Anthranilate synthase (927 aa)
         
  0.703
Phatr41702
Predicted protein (671 aa)
   
   
  0.690
Phatr25331
Predicted protein (505 aa)
   
   
  0.688
Phatr33493
Predicted protein (684 aa)
   
   
  0.659
Phatr18524
Predicted protein (766 aa)
   
   
  0.659
Phatr8926
Predicted protein (349 aa)
   
   
  0.645
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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