STRINGSTRING
Phatr40950 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr40950" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr40950Predicted protein (312 aa)    
Predicted Functional Partners:
GDCP
Glycine decarboxylase p-protein (1005 aa)
         
  0.574
ACC2
Biotin carboxylase (2282 aa)
       
    0.491
ACC1
Acetyl-coa carboxylase (2092 aa)
       
    0.491
Phatr44930
Predicted protein (575 aa)
       
    0.434
Phatr37283
Predicted protein (1033 aa)
       
    0.434
Phatr50401
Predicted protein (935 aa)
       
  0.425
Phatr45118
Predicted protein (799 aa)
       
  0.425
Phatr13890
Predicted protein (470 aa)
       
  0.425
Phatr12740
Predicted protein (459 aa)
       
  0.425
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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