STRINGSTRING
Phatr41003 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr41003" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr41003Predicted protein (251 aa)    
Predicted Functional Partners:
Phatr13192
Predicted protein (74 aa)
     
 
  0.964
Phatr12309
Predicted protein (134 aa)
       
 
  0.960
Phatr47883
Predicted protein (1054 aa)
       
      0.944
Phatr28723
Predicted protein (175 aa)
       
      0.944
Phatr35766
Predicted protein (828 aa)
       
 
  0.906
Phatrdraft1638
Predicted protein (548 aa)
       
 
  0.885
Phatr54743
Predicted protein (347 aa)
       
 
  0.876
Phatr11593
Predicted protein (324 aa)
     
 
  0.864
Phatr26061
Predicted protein (552 aa)
     
 
  0.800
Phatr13053
Predicted protein (725 aa)
       
 
  0.737
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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