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STRINGSTRING
Phatr41016 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr41016" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr41016Predicted protein (460 aa)    
Predicted Functional Partners:
GluRS_1
Glutamate-trna ligase; Belongs to the class-I aminoacyl-tRNA synthetase family (523 aa)
   
 
  0.891
Phatr11088
Predicted protein; Belongs to the class-I aminoacyl-tRNA synthetase family (1086 aa)
   
 
  0.889
Phatr29824
Predicted protein; Belongs to the class-I aminoacyl-tRNA synthetase family (1177 aa)
     
 
  0.846
Phatr27709
Predicted protein (640 aa)
   
   
  0.841
Phatr11126
Predicted protein (513 aa)
 
 
  0.827
Phatr27385
Predicted protein; Belongs to the class-I aminoacyl-tRNA synthetase family (697 aa)
   
 
  0.812
Phatr16963
Glutaminyl-trna synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family (568 aa)
   
 
  0.812
Phatr42051
Predicted protein (579 aa)
   
   
 
0.805
Phatr17198
Predicted protein; Belongs to the class-I aminoacyl-tRNA synthetase family (1052 aa)
     
 
  0.784
Phatr26176
Predicted protein (408 aa)
     
 
  0.776
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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