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Sec61alpha protein (Phaeodactylum tricornutum) - STRING interaction network
"Sec61alpha" - Transport protein Sec61 alpha subunit in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sec61alphaTransport protein Sec61 alpha subunit (472 aa)    
Predicted Functional Partners:
Phatr17885
Predicted protein (73 aa)
     
  0.996
Phatr22113
Bifunctional aspartokinase (870 aa)
       
 
  0.987
Phatr27039
Predicted protein (634 aa)
     
  0.986
Phatr23324
Predicted protein (176 aa)
   
  0.985
Phatr11032
Predicted protein (115 aa)
   
  0.976
rpl14
Predicted protein (143 aa)
   
  0.975
Phatr14535
Predicted protein (102 aa)
   
  0.974
secA
Protein translocase subunit secA (935 aa)
   
 
  0.962
Phatr29177
Predicted protein (185 aa)
   
  0.950
Phatr31919
Predicted protein (305 aa)
   
  0.942
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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