STRINGSTRING
Phatr41094 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr41094" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr41094Predicted protein (378 aa)    
Predicted Functional Partners:
CUL1_2
CULlin protein 4 (821 aa)
     
  0.948
Phatr36569
Predicted protein (166 aa)
     
  0.748
CUL1_3
CULlin protein 1 (741 aa)
     
  0.748
CUL1_1
CULlin protein 3 (762 aa)
     
  0.748
Phatr46891
Predicted protein (1007 aa)
       
      0.529
SUMO
Small ubiquitin-like modifier (103 aa)
       
      0.487
Phatr12578
Predicted protein (68 aa)
       
      0.487
Phatr47235
Predicted protein (209 aa)
       
      0.479
Rbx1
Predicted protein (134 aa)
       
  0.456
sUbi
Ubiquitin-like protein (268 aa)
       
  0.429
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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