STRINGSTRING
Phatr41172 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr41172" - Calreticulin in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr41172Calreticulin (390 aa)    
Predicted Functional Partners:
Phatr16786
Predicted protein (716 aa)
     
  0.873
Phatr42566
Predicted protein (220 aa)
     
  0.833
Phatr11781
Predicted protein (106 aa)
     
  0.833
BiP
ER luminal binding protein (659 aa)
     
  0.747
Phatr55197
Oligosaccharyl transferase (911 aa)
     
   
  0.724
Phatr47306
Predicted protein (193 aa)
     
  0.695
Phatr2808
Predicted protein (272 aa)
     
  0.695
Phatr10518
Predicted protein (125 aa)
     
  0.695
HSP70G
Protein heat shock protein (901 aa)
     
  0.668
Phatr55230
Predicted protein (709 aa)
     
  0.632
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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