STRINGSTRING
Phatr41220 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr41220" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr41220Predicted protein (420 aa)    
Predicted Functional Partners:
Phatr48524
Predicted protein (300 aa)
   
          0.525
Phatr11197
Predicted protein (93 aa)
   
          0.523
Phatr15980
Predicted protein (119 aa)
   
          0.521
Phatr7136
Predicted protein (147 aa)
   
          0.520
Phatr11792
Predicted protein (278 aa)
   
          0.515
Phatr3527
Predicted protein (233 aa)
   
          0.512
Phatr13895
Predicted protein (330 aa)
   
          0.511
Phatr48122
Predicted protein (366 aa)
   
          0.509
ZDS
Zeta-carotene desaturase (495 aa)
   
          0.503
Phatr48359
Predicted protein (218 aa)
   
          0.502
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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