STRINGSTRING
Phatr41508 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr41508" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr41508Predicted protein (394 aa)    
Predicted Functional Partners:
Phatrdraft561
Methionine aminopeptidase (363 aa)
     
 
  0.641
Phatr24514
Methionine aminopeptidase (326 aa)
     
 
  0.641
Phatr12595
Methionine aminopeptidase (357 aa)
     
 
  0.641
CHLH
Protoporphyrin IX magnesium chelatase, subunit H (1343 aa)
         
  0.533
Phatr10100
Annotation not available (1250 aa)
         
  0.533
Phatr17304
Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val) (429 aa)
     
 
  0.480
Phatr29217
Predicted protein (406 aa)
     
 
  0.475
Phatrdraft1648
Predicted protein (646 aa)
     
      0.446
PheRS
Phenylalanyl-trna synthetase class IIc family protein (405 aa)
   
 
  0.407
NRPS
Non ribosomal peptide synthase (1367 aa)
     
      0.401
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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