STRINGSTRING
Phatr41511 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr41511" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr41511Predicted protein (227 aa)    
Predicted Functional Partners:
Phatr25714
Ribosomal protein L15 (205 aa)
   
   
  0.969
Phatr19413
Predicted protein (69 aa)
     
        0.958
Phatr46999
Predicted protein (420 aa)
     
  0.858
Phatr48411
Predicted protein (264 aa)
     
 
  0.794
Phatr42848
Predicted protein (380 aa)
     
 
  0.794
Phatr46735
Predicted protein (163 aa)
   
   
  0.775
Phatr23324
Predicted protein (176 aa)
     
   
  0.762
Phatr48699
Predicted protein (217 aa)
   
   
  0.756
TPI/GapC3
Triosephosphate isomerase/glyceraldehyde-3-phosphate dehydrogenase (614 aa)
   
   
  0.755
Phatr8185
Predicted protein (100 aa)
     
   
  0.752
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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