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Phatr41667 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr41667" - Autophagy-related protein 3 in Phaeodactylum tricornutum
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr41667Autophagy-related protein 3 (302 aa)    
Predicted Functional Partners:
Phatr9342
Predicted protein (382 aa)
     
  0.998
Phatr50303
Predicted protein (124 aa)
     
  0.983
Phatr43913
Predicted protein; Involved in autophagic vesicle formation (330 aa)
       
  0.980
Phatr43401
Predicted protein (564 aa)
     
  0.977
Phatr50253
Predicted protein (557 aa)
     
 
  0.812
UBA3
Ubiquitin-activating enzyme E1, protein 3 (462 aa)
     
  0.791
hUba1
Ubiquitin-activating enzyme E1 (1050 aa)
     
  0.785
UBA1
Ubiquitin-activating enzyme E1, protein 1 (179 aa)
     
  0.785
SAE2
Sumo-activating enzyme 2 (643 aa)
     
  0.778
Phatr34373
Predicted protein; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of cytosolic tRNA(Lys), tRNA(Glu) and tRNA(Gln). Acts by mediating the C-terminal thiocarboxylation of the sulfur carrier URM1. Its N-terminus first activates URM1 as acyl-adenylate (-COAMP), then the persulfide sulfur on the catalytic cysteine is transferred to URM1 to form thiocarboxylation (-COSH) of its C-terminus. The reaction probably involves hydrogen sulfide that is generated from the persulfide intermediate and that acts as nucleophile towards URM1. Subsequently, a transient disulfi [...] (418 aa)
     
  0.778
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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