STRINGSTRING
Phatr41686 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr41686" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr41686Predicted protein (430 aa)    
Predicted Functional Partners:
Phatr26649
Predicted protein; Converts O-phosphoseryl-tRNA(Sec) to selenocysteinyl- tRNA(Sec) required for selenoprotein biosynthesis (512 aa)
   
  0.754
Phatr2217
Predicted protein (364 aa)
   
  0.754
Phatr15730
Predicted protein (442 aa)
   
  0.754
GAPN
Glyceraldehyde-3-phosphate dehydrogenase (588 aa)
   
  0.736
Phatr31906
Aldehyde dehydrogenase (551 aa)
   
  0.736
SSDH
Succinate semialdehyde dehydrogenase (471 aa)
   
  0.736
SSD1
Succinate semialdehyde dehydrogenase (533 aa)
   
  0.736
Phatr20445
Predicted protein (524 aa)
   
  0.736
Phatr16540
Aldehyde dehydrogenase (432 aa)
   
  0.736
NRPS
Non ribosomal peptide synthase (1367 aa)
         
  0.668
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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