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HDR protein (Phaeodactylum tricornutum) - STRING interaction network
"HDR" - Putative plastid isopentenyl diphosphate/dimethylallyl diphosphate synthase in Phaeodactylum tricornutum
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HDRPutative plastid isopentenyl diphosphate/dimethylallyl diphosphate synthase (401 aa)    
Predicted Functional Partners:
HDS
Putative chloroplast 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (757 aa)
 
  0.993
Phatr12972
Predicted protein (247 aa)
         
  0.949
Phatr12533
Predicted protein (222 aa)
         
  0.949
Phatr19000
Farnesyltranstransferase (337 aa)
   
  0.943
Phatr49325
Predicted protein (343 aa)
   
  0.942
Phatr47271
Predicted protein (330 aa)
   
  0.942
MPDC
MPDC mevalonate diphosphate decarboxylase (415 aa)
         
  0.904
Phatr10847
Predicted protein (284 aa)
 
        0.850
DXR
1-deoxy-d-xylulose-5-phosphate reductoisomerase (402 aa)
 
   
  0.791
Phatr12330
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (159 aa)
 
   
  0.718
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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