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Tkl protein (Phaeodactylum tricornutum) - STRING interaction network
"Tkl" - Transketolase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TklTransketolase (664 aa)    
Predicted Functional Partners:
TPI/GapC3
Triosephosphate isomerase/glyceraldehyde-3-phosphate dehydrogenase (614 aa)
   
  0.993
Phatr28222
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway (316 aa)
   
  0.991
RPE2
Ribulose-phosphate 3-epimerase (227 aa)
 
  0.989
FSA
Aldolase fructose-6-phosphate-aldolase (266 aa)
   
  0.985
GapC4
Predicted protein (336 aa)
   
  0.984
GapC2a
Glyceraldehyde-3-phosphate dehydrogenase (334 aa)
   
  0.981
GAPDH_3
Predicted protein (351 aa)
   
  0.981
GapC1
Glyceraldehyde-3-phosphate dehydrogenase (379 aa)
   
  0.981
GPI_2
Glucose-6-phosphate isomerase (551 aa)
   
  0.979
FBPC2
Plastidic inositol phosphatase (351 aa)
   
 
  0.977
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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