STRINGSTRING
Phatr41928 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr41928" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr41928Predicted protein (232 aa)    
Predicted Functional Partners:
sUbi
Ubiquitin-like protein (268 aa)
       
  0.747
hUbi
Predicted proteinUbiquitin extension protein 4 (381 aa)
       
  0.747
Phatr49037
Predicted protein (205 aa)
       
  0.747
CSN5
COP9 SigNalosome subunit 5 (370 aa)
     
 
  0.740
UBI3
Ubiquitin extension protein 3 (155 aa)
     
  0.635
6PGDH
6-phosphogluconate dehydrogenase, decarboxylating; Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH (490 aa)
       
      0.555
Phatr13356
6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) (505 aa)
       
      0.555
RabGDI
Predicted protein (446 aa)
     
      0.547
Phatr29340
Ubiquitin carboxyl-terminal hydrolase (499 aa)
     
   
  0.539
Phatr45947
Predicted protein (403 aa)
       
      0.539
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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