STRINGSTRING
Phatr41947 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr41947" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr41947Predicted protein (383 aa)    
Predicted Functional Partners:
ACL
Atp-citrate synthase (1082 aa)
   
 
  0.827
Phatr31367
Predicted protein (819 aa)
         
  0.643
FUM1
Precursor of fumarase fumarase (567 aa)
       
  0.593
Phatr50770
Predicted protein (549 aa)
       
  0.592
Phatr30145
Citrate synthase (471 aa)
   
 
  0.580
Phatr38891
Predicted protein (373 aa)
 
            0.572
D-LCR
D-lactate dehydrogenase (507 aa)
   
   
  0.563
Phatr33017
Predicted protein; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg- protoporphyrin IX (711 aa)
              0.493
TPI/GapC3
Triosephosphate isomerase/glyceraldehyde-3-phosphate dehydrogenase (614 aa)
         
  0.430
Phatr49591
Predicted protein (202 aa)
         
  0.412
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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