STRINGSTRING
Phatr42123 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr42123" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr42123Predicted protein (343 aa)    
Predicted Functional Partners:
RPN11
Regulatory proteasome non-atpase subunit 11 (311 aa)
       
  0.971
Phatr14843
Predicted protein (283 aa)
     
 
0.830
sUbi
Ubiquitin-like protein (268 aa)
       
  0.806
hUbi
Predicted proteinUbiquitin extension protein 4 (381 aa)
       
  0.806
Phatr49037
Predicted protein (205 aa)
       
  0.806
RPN5
Regulatory proteasome non-atpase subunit 5 (457 aa)
       
  0.780
PAS2
Ubiquitin carrier protein (168 aa)
       
  0.772
Phatr36198
Ubiquitin carrier protein (163 aa)
       
  0.772
Phatr30092
Predicted protein (147 aa)
       
  0.772
UBC2
Ubiquitin carrier protein (147 aa)
       
  0.772
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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