STRINGSTRING
Phatr42126 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr42126" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr42126Predicted protein (227 aa)    
Predicted Functional Partners:
Arf1
Predicted protein (184 aa)
       
  0.702
SybE
Predicted protein (227 aa)
     
 
  0.633
Phatr9033
Predicted protein (268 aa)
     
  0.615
COPbeta
Predicted protein; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (978 aa)
     
  0.606
Phatr7018
Predicted protein (171 aa)
     
 
  0.605
Phatr13691
Predicted protein (121 aa)
         
  0.571
Phatr42768
Predicted protein (599 aa)
         
  0.570
Phatr3366
Predicted protein (225 aa)
         
  0.570
Phatr13383
Predicted protein (164 aa)
         
  0.570
Phatr12620
Predicted protein (532 aa)
         
  0.570
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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