STRINGSTRING
Phatr42245 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr42245" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr42245Predicted protein (575 aa)    
Predicted Functional Partners:
Phatr17860
Predicted protein (253 aa)
 
 
  0.886
Phatr12373
Predicted protein (224 aa)
 
 
  0.881
KCT3
Beta-ketoacyl-CoA thiolase (457 aa)
   
   
  0.701
Phatr37858
Predicted protein (398 aa)
   
 
  0.579
Phatr2738
Predicted protein (235 aa)
   
 
  0.579
Phatr12807
Predicted protein (326 aa)
   
 
  0.579
Phatr12269
Predicted protein (300 aa)
   
 
  0.579
FUM1
Precursor of fumarase fumarase (567 aa)
       
    0.569
FAO1
Peroxisomal bifunctional enzyme (767 aa)
   
   
  0.558
Phatr35240
Predicted protein (684 aa)
   
   
  0.558
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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