STRINGSTRING
Phatr42255 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr42255" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr42255Predicted protein (349 aa)    
Predicted Functional Partners:
Phatr48794
Predicted protein (524 aa)
       
  0.449
Phatrdraft598
Predicted protein (313 aa)
   
   
  0.446
Phatrdraft1619
Predicted protein (515 aa)
   
   
  0.446
Phatr51608
2,5-diketo-D-gluconic acid reductase A-like protein (230 aa)
   
   
  0.446
Phatr50252
Predicted protein (479 aa)
   
   
  0.446
Phatr48862
Predicted protein (331 aa)
   
   
  0.446
Phatr48100
Predicted protein (404 aa)
   
   
  0.446
Phatr43684
Predicted protein (330 aa)
   
   
  0.446
Phatr42736
Predicted protein (355 aa)
   
   
  0.446
Phatr41470
Predicted protein (331 aa)
   
   
  0.446
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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