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Phatr42302 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr42302" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr42302Predicted protein (289 aa)    
Predicted Functional Partners:
Phatr36955
Predicted protein (132 aa)
     
 
  0.901
Phatr11462
Predicted protein (130 aa)
     
 
  0.901
Phatr13281
Predicted protein; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly (181 aa)
     
        0.816
Phatr12679
Predicted protein (290 aa)
     
        0.766
Phatr14145
Predicted protein (516 aa)
     
        0.701
Phatr13820
Predicted protein (282 aa)
     
      0.688
METH
Methionine synthase (1245 aa)
         
  0.667
Phatr27905
Predicted protein (418 aa)
     
        0.658
Phatr6258
Predicted protein (205 aa)
     
        0.656
Phatr45993
Predicted protein (322 aa)
     
   
  0.651
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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