STRINGSTRING
CK1 protein (Phaeodactylum tricornutum) - STRING interaction network
"CK1" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CK1Predicted protein (310 aa)    
Predicted Functional Partners:
Phatr30019
Predicted protein (299 aa)
       
  0.831
Phatr13820
Predicted protein (282 aa)
       
  0.827
Phatr6258
Predicted protein (205 aa)
       
  0.764
Phatr37596
Predicted protein (531 aa)
       
  0.697
DDB1
Damage-specific DNA binding protein 1 (1284 aa)
     
      0.681
hCDK3
Predicted protein (295 aa)
   
 
  0.657
Phatr47992
Predicted protein (432 aa)
       
  0.654
Phatr55091
Predicted protein (524 aa)
       
  0.644
Phatr54342
Predicted protein (585 aa)
       
  0.644
CPD3
Class II CPD photolyase (511 aa)
       
  0.644
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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