STRINGSTRING
Phatr42329 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr42329" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr42329Predicted protein (238 aa)    
Predicted Functional Partners:
Phatr16334
Predicted protein (223 aa)
   
        0.543
Phatr11197
Predicted protein (93 aa)
   
        0.529
Phatr49879
Predicted protein (253 aa)
   
        0.520
Phatr16471
Predicted protein (207 aa)
   
        0.495
Phatr6402
Predicted protein (170 aa)
   
          0.489
Phatrdraft1025
Tocopherol cyclase (515 aa)
   
          0.482
Phatr14626
Predicted protein (261 aa)
   
          0.473
Phatr33845
Predicted protein (315 aa)
   
        0.471
Phatr2738
Predicted protein (235 aa)
   
        0.461
Phatr37417
Predicted protein (377 aa)
     
   
  0.460
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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