STRINGSTRING
Phatr42361 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr42361" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr42361Predicted protein (380 aa)    
Predicted Functional Partners:
Phatr11217
Predicted protein (340 aa)
     
 
  0.733
Phatr52174
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1143 aa)
   
 
  0.714
Phatr13581
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1165 aa)
   
 
  0.714
Phatr47293
Predicted protein (580 aa)
         
  0.578
Phatr9619
Predicted protein (408 aa)
     
 
  0.571
Phatr54168
Annotation not available (509 aa)
     
 
  0.571
Phatr14125
Monogalactosyldiacylglycerol synthase (394 aa)
     
 
  0.571
Phatr21316
Predicted protein; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (727 aa)
   
   
  0.558
Phatr17198
Predicted protein (1052 aa)
   
   
  0.548
Phatr9724
Predicted protein (371 aa)
         
  0.533
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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