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Phatr42440 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr42440" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr42440Predicted protein (475 aa)    
Predicted Functional Partners:
METH
Methionine synthase (1245 aa)
         
  0.667
Phatr36955
Predicted protein (132 aa)
      
 
  0.623
Phatr11462
Predicted protein (130 aa)
      
 
  0.623
Phatr47293
Predicted protein (580 aa)
         
  0.622
Phatr12107
Predicted protein (460 aa)
       
  0.569
Phatr22113
Bifunctional aspartokinase (870 aa)
       
  0.518
ACL
Atp-citrate synthase (1082 aa)
       
  0.492
Phatr21296
Biotin synthase (437 aa)
   
   
  0.453
Phatr41807
Predicted protein (407 aa)
   
   
  0.450
Phatr36165
Predicted protein (448 aa)
   
   
  0.450
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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