STRINGSTRING
Phatr42467 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr42467" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr42467Predicted protein (679 aa)    
Predicted Functional Partners:
Phatr19324
Predicted protein (554 aa)
       
  0.727
Phatr34610
N-acetylglucosaminyl phosphatidylinositol deacetylase (267 aa)
   
  0.705
Phatr52551
Predicted protein (600 aa)
     
  0.659
DPM1
Dolichyl-phosphate mannosyltransferase (236 aa)
   
 
  0.623
PMM1
Phosphomannose mutase; Involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions (249 aa)
     
  0.583
Phatr47245
Predicted protein (480 aa)
   
 
  0.576
Phatr45980
Predicted protein (348 aa)
   
 
  0.576
Phatr45712
Predicted protein (480 aa)
   
 
  0.576
Phatr34317
Dolichol phosphate glucosyltransferase (320 aa)
   
 
  0.576
Phatr50500
Predicted protein (358 aa)
   
   
  0.561
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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