STRINGSTRING
Phatr42504 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr42504" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr42504Predicted protein (448 aa)    
Predicted Functional Partners:
Phatr45973
Predicted protein (475 aa)
       
 
  0.476
Phatr15063
Predicted protein (225 aa)
       
 
  0.476
Phatr12431
Predicted protein (801 aa)
       
 
  0.444
Phatr7164
Predicted protein (170 aa)
       
 
  0.439
Phatr21501
Predicted protein (175 aa)
       
 
  0.439
Phatr17109
Predicted protein (172 aa)
       
 
  0.439
Phatr16364
Predicted protein (288 aa)
       
 
  0.439
UNC18
Predicted protein (588 aa)
       
 
  0.401
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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