STRINGSTRING
Phatr42527 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr42527" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr42527Predicted protein (522 aa)    
Predicted Functional Partners:
Phatr30786
Xylose isomerase (445 aa)
 
   
  0.795
Phatr45308
Ribokinase (709 aa)
       
  0.786
Phatr31147
Predicted protein; Catalyzes the dehydration of methylthioribulose-1- phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1- phosphate (DK-MTP-1-P) (559 aa)
       
  0.667
Phatr42437
Predicted protein (428 aa)
   
 
  0.640
Phatr38005
Predicted protein (1005 aa)
   
 
  0.640
P5CS
Delta l-pyrroline-5-carboxylate synthetase (747 aa)
     
 
  0.606
Phatr18027
Predicted protein (706 aa)
     
 
  0.606
Phatr12881
Predicted protein (438 aa)
 
   
  0.603
Phatr1129
Predicted protein (562 aa)
   
 
  0.603
MS
Malate synthase (553 aa)
       
      0.530
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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