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Phatr42571 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr42571" - Ubiquitin carboxyl-terminal hydrolase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr42571Ubiquitin carboxyl-terminal hydrolase (1319 aa)    
Predicted Functional Partners:
sUbi
Ubiquitin-like protein (268 aa)
       
  0.836
hUbi
Predicted proteinUbiquitin extension protein 4 (381 aa)
       
  0.836
Phatr49037
Predicted protein (205 aa)
       
  0.836
UBI3
Ubiquitin extension protein 3 (155 aa)
       
  0.701
Phatr46292
Predicted protein (772 aa)
     
 
  0.592
Phatr32097
Predicted protein (368 aa)
     
 
  0.562
Phatr30898
Vacuolar protein (429 aa)
     
 
  0.562
Phatr31375
Predicted protein (168 aa)
       
 
  0.551
Phatr11901
Predicted protein (168 aa)
       
 
  0.551
Phatr21982
Predicted protein (641 aa)
     
  0.512
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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