STRINGSTRING
Phatr42619 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr42619" - Predicted protein in Phaeodactylum tricornutum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr42619Predicted protein (494 aa)    
Predicted Functional Partners:
Phatr7173
6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin (143 aa)
   
 
  0.884
Phatr33427
Predicted protein (386 aa)
   
  0.822
Phatr47432
Predicted protein (281 aa)
   
  0.809
Phatr46623
Predicted protein (693 aa)
   
  0.786
Phatr6454
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate (194 aa)
     
 
  0.696
Phatr38165
Predicted protein (232 aa)
   
 
  0.639
PHATR_3140
Predicted protein (196 aa)
         
  0.596
RFK
Riboflavin kinase (150 aa)
       
  0.507
Phatr12172
Predicted protein (153 aa)
       
  0.507
Phatr12107
Predicted protein (460 aa)
         
  0.455
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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