STRINGSTRING
Phatr42625 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr42625" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr42625Predicted protein (724 aa)    
Predicted Functional Partners:
hUfd2
Predicted protein (82 aa)
     
 
  0.873
hNpl4
Predicted protein (473 aa)
     
 
  0.808
Phatr34061
Predicted protein (244 aa)
     
 
  0.799
sUbi
Ubiquitin-like protein (268 aa)
       
 
  0.797
hUbi
Predicted proteinUbiquitin extension protein 4 (381 aa)
       
 
  0.797
Phatr49037
Predicted protein (205 aa)
       
 
  0.797
sUfd1
Predicted protein (191 aa)
     
 
  0.797
hUfd1
Predicted protein (202 aa)
     
 
  0.797
Phatr8950
Predicted protein (252 aa)
     
 
  0.796
Phatr8754
Predicted protein (165 aa)
     
 
  0.796
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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